PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_2551BF2C1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 52aa    MW: 6453.35 Da    PI: 9.5707
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_2551BF2C1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY41.52.7e-131947230
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST CS
                   WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa 30
                           +Dgy+WrKYGqK +  + fpr YYrC ++
  Traes_3DL_2551BF2C1.1 19 SDGYQWRKYGQKRIMRTSFPRCYYRCCYH 47
                           7*************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-131050IPR003657WRKY domain
SuperFamilySSF1182904.97E-131247IPR003657WRKY domain
PROSITE profilePS5081114.161352IPR003657WRKY domain
SMARTSM007741.4E-41852IPR003657WRKY domain
PfamPF031062.8E-112052IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 52 aa     Download sequence    Send to blast
LCEVHFSFNR VTVTSSPYSD GYQWRKYGQK RIMRTSFPRC YYRCCYHRER SC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8063903e-54JQ806390.1 Hordeum vulgare WRKY transcript factor 49 (WRKY49) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970387.13e-19PREDICTED: probable WRKY transcription factor 4
TrEMBLW5D8J83e-32W5D8J8_WHEAT; Uncharacterized protein
STRINGMLOC_3853.11e-24(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125382837
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]